Materials and Reagents

Polypropylene sterile sample collection containers (SARSTEDT, catalog number: 75.9922.745)
Centrifuge Tubes, 50 ml and 15 ml (Olympus Plastics, catalog numbers: 28-106 and 28-101)
Positive Displacement Pipettes and Tips (Gilson, MICROMAN)
Micropipettes and Tips (Gilson, Pipetman)
5 mm round coverslips (WPI, catalog number: 502040)
0.22 μm Polyethersulfone (PES) Vacuum-Driven Filter System, 500 ml and 1 L (Olympus Plastics, catalog numbers: 25-227 and 25-229)
MLA Pipette Tips, 200 μl (Vista Labs, catalog number: 9025)
Osmolarity Calibration Standard (ELITech, OPTIMOLE, catalog number: OA-029)
Osmometer Paper Sample Disks (Wescor, VAPRO Sample Disks, catalog number: SS-033)
Sodium Chloride (NaCl) (Sigma-Aldrich, catalog number: S7653)
Potassium Chloride (KCl) (Fisher Scientific, catalog number: P217)
Magnesium Sulfate Heptahydrate (MgSO₄·7H₂O) (Sigma-Aldrich, catalog number: 63140)
Monopotassium Phosphate (KH₂PO₄) (Sigma-Aldrich, catalog number: 60216)
Calcium Chloride Dihydrate (CaCl₂·2H₂O) (Sigma-Aldrich, catalog number: 21097)
HEPES (Fisher Scientific, catalog number: BP310)
D-(+)-Glucose (C₆H₁₂O₆) (Sigma-Aldrich, catalog number: G8270)
Sodium Lactate (C₃H₅NaO₃) (Sigma-Aldrich, catalog number: L7900)
Sodium Pyruvate (C₃H₃NaO₃) (Sigma-Aldrich, catalog number: P2256)
Sodium Hydroxide (NaOH) (Sigma-Aldrich, catalog number: 221465)
Sodium Bicarbonate (NaHCO₃) (Sigma-Aldrich, catalog number: S5761)
Fetal Bovine Serum (FBS) (Gibco, catalog number: 16000036)
Hydrochloric Acid (HCl) (Fisher Scientific, catalog number: A144S)
Human fibrillogenic peptide SEM1(86-107) (Celtek and CPC Scientific, sequence: DLNALHKTTKSQRHLGGSQQLL)
pH 4.0 Standard, Red (EMD Chemicals, catalog number: BX1628-1)
pH 7.00 Standard, Yellow (Fisher Scientific, catalog number: SB107-500)
pH 10.00 Standard, Blue (Fisher Scientific, catalog number: SB115-500)
Phosphate-Buffered Saline (PBS) (Fisher Scientific, catalog number: BP665-1)
70% Ethanol (Decon Labs, catalog number: V1001)
Human Tubal Fluid (HTF) Solution (see Recipes)
High-Saline solution (HS) (see Recipes)
Capacitation media (see Recipes)
Motility disrupting reagents and control reagents (see Recipes)

Equipment

General
1. Incubator (Fischer Scientific, Isotemp Incubator)
2. CO₂ Incubator (for capacitation) (Eppendorf, Galaxy 170S, catalog number: CO17101001)
3. Water Filter (Millipore, Milli-Q, Advantage, catalog number: A10-TOC)
4. Balances (Mettler Toledo, models: XS2002S and XS105)
5. pH Meter (Denver Instruments, Ultra Basic UB-10)
6. Vapor Pressure Osmometer (Wescor, model 5600)
7. 10 μl Fixed volume MLA pipette (Vista Labs, catalog number: 1051C)
8. Forceps (Excelta, catalog number: 5-S-SE)
9. Thermomixer (Eppendorf) for generation of semen amyloid fibrils
10. 4 °C refrigerator
11. Hemacytometer (Hausser Scientific, Reichert Bright-Line, catalog number: 1483)
12. Slanted Tube Rack for 50 ml Tubes (Bel-Art, catalog number: F18794-0028)

Microscopy (Figure 1)
1. Inverted microscope (Olympus, model: IX-71)
2. Water immersion objective (Olympus, UPlanSApo, 60x, 1.20 W, ∞/0.13-0.21/FN26.5, catalog number: UPLSAPO 60XW)
3. Digital high-speed camera (NAC Image Technology, Memrecam GX-1 or similar type of high-speed camera)
4. Light source (Olympus, 100 W halogen lamp housing U-LH100L-3 with lamp 12V100WHAL)
5. Light source power supply (Olympus, catalog number: TH4-100)
6. Vibration Isolation Table (Newport, Vision IsoStation)
7. Recording chamber (Warner Instruments, RC-24E); A rectangular coverslip (Corning, 24 x 40 mm Rectangular #1 Cover Glass, thickness .13 mm, catalog number: 2975-244) is glued to the bottom of the chamber with SYLGARD 184 (Dow Corning, Midland, MI) according to the manufacturer’s instructions. Grease is not recommended since it can leach into the chamber and alter the physiological properties of sperm cells.

Perfusion and Suction (Figures 2 and 3)
1. Teflon 8-position perfusion manifold (Warner Instruments, MP-8, catalog number: 64-0211)
2. Suction control (B. Braun, Exadrop, Germany)
3. Suction tube (Warner Instruments, ST-QE1, catalog number: 64-1403)
4. Magnetic clamps for suction tube (Warner Instruments, MAG-1, catalog number: 64-0358; and MAG-7, catalog number: 64-1554)
5. Polytetrafluoroethylene (PTFE) perfusion tubing (Microbore PTFE Tubing, 0.022” ID x 0.042” OD) (Cole-Parmer, catalog number: EW-06417-21)
6. Silicone Connector Tubing (Platinum-Cured Silicone Tubing, 1/32” ID x 3/32” OD) (Cole-Parmer, catalog number: EW-95802-01)
7. Manifold Connector Tubing (PTFE Tubing, 1/32” ID x 1/16” OD) (Cole-Parmer, catalog number: EW-06407-41)
8. Stopcock with Luer Connections; 4-way; Male Lock (Cole-Parmer, catalog number: EW-30600-09)
9. Female Luer Hose Barb Adapter, 1/16” (Cole-Parmer, catalog number: EW-45508-00)
10. Syringes (Air-Tite, Norm-Ject Luer Lock Syringe, catalog number: AL20 and AL3)

Figure 1. Fully assembled high-speed video microscopy rig with perfusion setup, on a vibration-isolation table

Figure 2. Assembled perfusion chamber for recording. A. The recording chamber is placed inside the stage adapter and connected to perfusion lines via a perfusion manifold. The suction line is attached to a metal suction tube, which is positioned on the stage adapter with a magnetic clamp. B. Top view of the same setup.

Figure 3. Homemade perfusion line. The large syringe is used to hold perfusion fluid, and the small syringe is used to purge air bubbles from the system. The Perfusion Manifold allows for up to 8 perfusion lines to be connected simultaneously. Extra manifold ports are blocked when not in use.

Software

Memrecam GXLink software, version 3.20 (NAC Image Technology)
ImageJ version 1.44 (http://rsb.info.nih.gov/ij/)
Statistical Analysis Software (OriginLabs, Origin, or equivalent)

Procedure

Sperm collection and purification–“Swim-up”
1. Obtain approval from your organization’s Institutional Review Board to conduct studies involving human subjects. Recruit healthy male volunteers of reproductive age older than 21 years to provide semen samples. Freshly ejaculated semen samples should be collected by masturbation into sterile polypropylene sample containers. Ensure that the sample containers chosen are clear of plasticizers, which can negatively affect sperm quality. Advise donors to avoid sexual activity for 3 days before collecting a sample. Ask donors to record the time of collection, and to deliver the sample to the lab within 30 min of collection. (Figure 4)
2. The human ejaculate sample should be left at room temperature for 30-60 min from the time of collection to allow it to gradually become less viscous (through the action of seminal proteases). This eases pipetting of the semen and ensures complete release of sperm cells from the seminal plasma, which contains sperm-binding proteins such as semenogelins. However, it is essential to start the “swim-up” (Step A4 and Figure 4) within 1 h after collection to prevent the seminal proteases from damaging the sperm cells.
  
  Figure 4. Semen sample and tubes of HTF fluid. The semen sample is in the collection container at right. The donor’s anonymized identity number and time of collection is labeled on the collection container (but redacted for publication). One ml of semen will be underlaid into each of the tubes of HTF on the left. In this case, only 3 tubes of HTF were used, as the ejaculate volume was roughly 3 ml.
3. Add 7 ml of HTF (Human Tubal Fluid) solution to a 50 ml centrifuge tube and warm it to approximately 37 °C in the incubator. Visually assess the volume of the ejaculate–if the volume is greater than 1 ml, prepare multiple tubes of HTF solution (Figure 4).
4. Once the HTF is warm, carefully underlay 1 ml of liquefied ejaculate to the bottom of each tube (Figure 5). Use of a positive displacement pipette greatly facilitates this process. Avoid agitating the semen, or introducing bubbles, which can lift strands of semen to the surface of the HTF buffer. If strings of semen persist when removing the pipette from the semen sample, more liquification time is needed.
  
  Figure 5. Semen sample before and after swim-up. A. HTF fluid in falcon tube before addition of semen. B. One ml of semen carefully underlaid at the bottom of the tube. C. The same tube after 1 h of incubation at 37 °C. Note the supernatant is cloudier, and the boundary between the semen and the HTF fluid less defined. This shows that sperm has swum up into the supernatant. D. The same tube after removing several milliliters of supernatant.
5. Place the tubes in a 37 °C incubator for 1 h, in a stand that holds them at a 45° angle, in order to increase the surface area for swim-up. If the incubator is a CO₂ incubator, close the cap tightly to prevent acidification of buffer–CO₂ is not required for this procedure. During this incubation, motile sperm will gradually swim out of the semen sample and up into the HTF supernatant, thereby cleansing themselves of most residual seminal proteins. Purifying human spermatozoa using this “swim-up” technique avoids sperm damage induced by the G-forces of the centrifugation used in other purification procedures (Figure 5).
6. After 1 h, the supernatant should contain only motile sperm. Carefully collect about 2-3 ml of the supernatant from each tube, merging the supernatant from all HTF tubes into a single separate 15 ml conical tube (Figures 5 and 6). The most motile sperm are found in the upper sections of the supernatant, so to gather only highly motile sperm, pipette from near the surface of the supernatant. To avoid gathering any seminal plasma, do not attempt to remove all of the supernatant–leave several milliliters of HTF remaining above the seminal plasma. Discard HTF and semen tubes after removal of supernatant.
7. Let the 15 ml tube stand vertically for about 30-60 min at RT. Spermatozoa will concentrate at the bottom (where a white cloud will form) as they gradually become less motile due to HTF solution’s relatively low sodium concentration. When submersed in HS solution (which has a higher sodium concentration) these sperm cells will resume their aggressive motility (Figure 6).
  
  Figure 6. Sperm settling and concentration. A. Three ml of HTF supernatant was removed from each swim-up tube and pooled into one 15 ml conical tube. B. The cloud of sperm cells that have settled to the bottom of the tube after 30-60 min standing at RT. C. Several milliliters of supernatant removed to concentrate the sperm cells. D. Sperm cloud resuspended by gentle pipetting.
8. Remove the supernatant from the tube to concentrate the cells, and gently resuspend the cloud of cells in the remaining HTF solution (Figure 6). A normal ejaculate should contain at least 15 x 10⁶ sperm cells per ml (WHO, 2010), but sperm counts vary widely between different samples, so technicians will need to develop an intuition of how much supernatant to leave in the tube, based on the size of the sperm cloud, in order to reach the desired concentration of cells. If cell concentration is outside of the desired range in downstream applications, the technician can use more or less of this sperm solution, or if needed, dilute it with more HTF or allow the cells to settle again and remove additional supernatant.
9. Take an aliquot of the sperm suspension and determine the cell concentration using a hemacytometer.
Recording high-speed video of sperm motility
1. Place a 5 mm diameter coverslip in the main diamond-shaped well of the recording chamber. Then fill the recording chamber with ~300 μl of room temperature HS solution, making sure that all wells (including the main well and the suction wells) have liquid in them, and that no air bubbles are blocking the covered connection lane between the front and back wells. Ensure that the coverslip is fully submerged and flat on the bottom of the recording chamber, with no bubbles underneath it, by tapping it down with a pipette tip or forceps.
2. Take 20-50 μl of the concentrated sperm cell suspension from the storage tube, and gently add it to the HS solution above the coverslip. Although spermatozoa are motile, many will accumulate on the surface of the coverslip, where their heads will adhere electrostatically, while their flagella will vigorously beat in the solution just above the coverslip. Allow sperm cells to sediment onto the coverslip for 10-30 min at room temperature.
3. If capacitated cells are needed, first allow cells to adhere to the coverslip, then perfuse the recording chamber with capacitation media and incubate cells at 37 °C for 4 h in a 5% CO₂ incubator (Lishko et al., 2010). It is essential to use a CO₂ incubator at this step as capacitation media contains sodium bicarbonate, which together with atmospheric CO₂ maintains the required pH during the capacitation process. It is recommended to adhere the cells before adding capacitation media because the FBS in the capacitation media makes the sperm adhere less strongly to the coverslip.
4. With the microscope in Differential Interference Contrast mode, add a ~50 μl droplet of water directly onto the 60x objective, place the recording chamber into the stage adapter and mount the adapter on the microscope stage, then put the perfusion and suction lines into place, as shown in Figure 2. Then turn the light source on and find the correct focal plane for the upper surface of the coverslip. It is often helpful to do this by first finding an edge of the coverslip and then gradually adjusting the focal plane upwards–you will first encounter the glass bottom of the recording chamber, then the lower surface of the coverslip, then the upper surface of the coverslip.
5. At this point, it is often useful to turn on HS perfusion to remove debris and excess spermatozoa from the recording chamber. For capacitated sperm, one must avoid turning on perfusion immediately after a fresh coverslip is placed into the perfusion chamber to ensure that the largest number of capacitated spermatozoa are attached and available for analysis. In this case, after the appropriate cell is chosen and recorded, the perfusion can be turned on. Ensure that the HS solution in the syringe has reached room temperature (~24 °C) before starting perfusion. If incubation at a warmer temperature is required, you may place the recording chamber and stage adapter into the incubator, or use a built-in electrical heater in the stage adapter or incorporated into the perfusion line.
6. Assess the sperm cells for strict morphology, overall motility, and concentration using WHO guidelines (WHO, 2010). Morphologically normal sperm cells (Kruger et al., 1987) can then be sampled for movement analysis. Morphological abnormalities of sperm include vacuolated, round, amorphous, tapering, pyriform, megalocephalic or microcephalic heads; asymmetrical, bent or thin midpiece; and various tail defects. Sperm motility should always be confirmed and recorded before any motility-altering drug/compound treatment is administered.
7. Once appropriate cells are identified, switch the optical routing to the camera mode, and activate the camera to record video. It is useful to find a field of view with enough sperm cells to allow for multiple measurements from the same video, but for accurate measurements, assess cells whose flagella do not overlap with other nearby cells. Gain, frame rate, and many other recording settings can be adjusted in the GXLink software. We use a frame rate of 1,000 frames per second to facilitate beat frequency calculations since 1 frame then corresponds to an interval of approximately 1 ms.
8. Once video has been captured of control cells, perfuse or pipette in treatment compounds (e.g., 50 μg/ml SEM1(86-107) fibrils or the corresponding monomeric peptide control), wait 10 min, and then record additional videos. After all needed video has been recorded, carefully remove the coverslip from the recording chamber with forceps, and then discard it. If treatment with several different compounds is required, cells can also be seeded onto coverslips and incubated simultaneously in separate wells of a cell-culture dish, then each coverslip can be carefully transferred one at a time into the recording chamber for imaging. Ensure that the cells remain covered with liquid at all times.
  Once all needed recordings have been made, remove the coverslip from the recording chamber, aspirate the remaining solution in the recording chamber, and clean by rinsing it with water and 70% ethanol, followed by a triple rinse with deionized water (18 MΩ). Avoid prolonged exposure of the chamber plastic to alcohols. The chamber can be reused indefinitely.
Data analysis
1. Videos recorded in the GXLink software can be exported in a variety of formats. For quantitative analysis, export the movie as a series of images in 8-bit TIFF format.
2. Import these TIFF files as an image stack in ImageJ. Use the marker tool to mark a point touching the edge of a sperm’s flagellum, near the midpiece, when it is at its maximum displacement from center. Then scroll through the images until the flagellum touches that marker again (Figure 7). The number of frames between the two touches of the marker point represents the Period (T), in milliseconds, which is the time required to complete one full flagellar stroke (if the frames were collected at 1,000 frames per second, where 1 frame equals 1 ms). Since Beat Frequency (BF) is measured in Hz, use the following equation to determine BF of the sperm tail:
  
  Collect frequency measurements for a statistically appropriate number of cells, and evaluate the data with the statistical analysis software of your choice.
3. To quantitate the effects of SEM1(86-107) fibrils or other agents on motility, BFs are calculated twice: first prior to perfusion of the agent, and then 10 min after the perfusion.
  
  Figure 7. Example frames illustrating the measurement of one full beat cycle of a human spermatozoa. The numbers above each frame indicate specific frame position out of 2,310 frames collected. There is a 12-frame gap between each image displayed here, and the scale bars represent approximately 5 μm. The image was contrast enhanced in ImageJ for visual clarity. This spermatozoon has a period of 60 ms, and therefore a frequency of approximately 17 Hz. Video (.avi) and TIFF files are included as supplemental materials.
Notes
1. Once high-speed images have been captured, various methods exist to evaluate the beat frequency. In addition to the method described here, it is possible to choose a time window (e.g., 0.5 s or 1 s) and measure how many full beats are completed in this time window, then mathematically scale that number to beats per second (Roan et al., 2017). Others have used custom computer image analysis software to trace the pattern of flagellar motion and fit sinusoidal curves to it, or Fast Fourier Transform analysis to report beat frequency directly from the power spectrum of the intensity changes along a line scan perpendicular to the flagellar beat axis (Wennemuth et al., 2003; Burnett et al., 2010; Saggiorato et al., 2017; Muschol et al., 2018).
2. Beat Frequency (BF) should not be confused with Beat Crossing Frequency (BCF) as reported by CASA systems, which is defined as the number of times the sperm head crosses the direction of movement of the free-swimming cell (Mortimer, 2000). Due to the sinusoidal nature of tethered flagellar motion, the BCF will generally be twice as large as the BF.
3. When mammalian spermatozoa are free-swimming, rather than tethered, their flagella move in all three dimensions, resulting in a roughly helical path, which complicates beat frequency analysis (Muschol et al., 2018).
Recipes
1. Human Tubal Fluid (HTF) Solution
  1. Adjust pH to 7.3-7.4 with NaOH. Osmolarity should be 280 ± 5 mOsm, measured using a Vapor Pressure Osmometer
  2. Filter through a sterile 0.2 μm PES filter and store the final solution at 4 °C for up to one month. Sodium lactate solution is used instead of lactic acid due to sodium lactate’s greater stability and manufacturing consistency
2. High-Saline (HS) Solution
  1. Adjust pH to 7.3-7.4 with NaOH. Osmolarity should be 320 ± 5 mOsm, measured using a Vapor Pressure Osmometer
  2. Filter through a sterile 0.2 μm PES filter and store the final solution at 4 °C for up to one month. Sodium lactate solution is used instead of lactic acid due to sodium lactate’s greater stability and manufacturing consistency
3. Capacitation media (Lishko et al., 2010)
  In premade HS solution, add 20% Fetal Bovine Serum and 25 mM NaHCO₃
  Note: Capacitation media must be prepared freshly before each use and used within the same day.
4. Motility disrupting reagents and control reagents
  1. Human fibrillogenic peptide SEM1(86-107) (Sequence: DLNALHKTTKSQRHLGGSQQLL) was custom-synthesized by a commercial vendor (Celtek and CPC Scientific) but can also be synthesized in-house. Peptide purity should be > 95%. The peptide can be dissolved at a concentration of 2.5 mg/ml in PBS (pH 7.0). This peptide serves as the monomeric peptide (negative) control and does not restrict sperm motility
  2. To generate amyloid fibrils, the 2.5 mg/ml SEM1(86-107) peptide is agitated in 100 μl aliquots for 12 h at 37 °C at 1,400 rpm in an Eppendorf Thermomixer, after which the solution should look turbid as a result of fibril formation
  3. Fibril formation can be confirmed by thioflavin T binding or electron microscopy (Roan et al., 2011)
  4. We have previously found that cationic fibrils from semen [SEM1(86-107) fibrils, SEVI fibrils, and Galago repeat fibrils] entrapped sperm cells, while monomeric peptides [unagitated SEM1(86-107), SEM1(68-85) and SEM1(108-159)] and non-cationic fibrils [Aβ(1-42)] did not (Roan et al., 2017)
Acknowledgments
This work was supported by NIH grants R21AI116252 and R21AI122821 to N.R.R, and by R01GM111802, Pew Biomedical Scholars Award, and Packer Wentz Endowment Will to P.V.L. The authors would like to thank Dr. Donner F. Babcock for his valuable suggestions and comments, and to Emiliano Tabarsi for his technical assistance.
Competing interests
We declare there are no competing interests.
Ethics
This study was conducted with the approval of the Committee on Human Research at the University of California, Berkeley (CPHS protocol #2013-06-5395; issued under University of California, Berkeley Federalwide Assurance #00006252).
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