Education
Ph.D., Institute National des Sciences Appliquées (INSA)
Current position
Professor, School of Life Sciences, Nanjing University, China
Publications
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Zhang, X., Yang, S., Wang, J., Jia, Y., Huang, J., Tan, S., Zhong, Y., Wang, L., Gu, L., Chen, J. Q., Pan, Q., Bergelson, J. and Tian, D. (2015). A genome-wide survey reveals abundant rice blast R genes in resistant cultivars. Plant J 84(1): 20-28.
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Yang, S., Wang, L., Huang, J., Zhang, X., Yuan, Y., Chen, J. Q., Hurst, L. D. and Tian, D. (2015). Parent-progeny sequencing indicates higher mutation rates in heterozygotes. Nature 523(7561): 463-467.
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Zhou, G. C., Shao, Z. Q., Ma, F. F., Wu, P., Wu, X. Y., Xie, Z. Y., Yu, D. Y., Cheng, H., Liu, Z. H., Jiang, Z. F., Chen, Q. S., Wang, B. and Chen, J. Q. (2015). The evolution of soybean mosaic virus: An updated analysis by obtaining 18 new genomic sequences of Chinese strains/isolates. Virus Res 208: 189-198.
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Zhang, Y. M., Shao, Z. Q., Wang, Q., Hang, Y. Y., Xue, J. Y., Wang, B. and Chen, J. Q. (2015). Uncovering the dynamic evolution of nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in Brassicaceae. J Integr Plant Biol.
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Liu, H., Zhang, X., Huang, J., Chen, J. Q., Tian, D., Hurst, L. D. and Yang, S. (2015). Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee. Genome Biol 16: 15.
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Sun, X., Pang, H., Li, M., Chen, J. and Hang, Y. (2014). Tracing the origin and evolution of plant TIR-encoding genes. Gene 546(2): 408-416.
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Shao, Z. Q., Zhang, Y. M., Hang, Y. Y., Xue, J. Y., Zhou, G. C., Wu, P., Wu, X. Y., Wu, X. Z., Wang, Q., Wang, B. and Chen, J. Q. (2014). Long-term evolution of nucleotide-binding site-leucine-rich repeat genes: understanding gained from and beyond the legume family. Plant Physiol 166(1): 217-234.
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Wu, P., Shao, Z. Q., Wu, X. Z., Wang, Q., Wang, B., Chen, J. Q., Hang, Y. Y. and Xue, J. Y. (2014). Loss/retention and evolution of NBS-encoding genes upon whole genome triplication of Brassica rapa. Gene 540(1): 54-61.
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Amborella Genome, P. (2013). The Amborella genome and the evolution of flowering plants. Science 342(6165): 1241089.
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Yang, S., Li, J., Zhang, X., Zhang, Q., Huang, J., Chen, J. Q., Hartl, D. L. and Tian, D. (2013). Rapidly evolving R genes in diverse grass species confer resistance to rice blast disease. Proc Natl Acad Sci U S A 110(46): 18572-18577.
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Shao, Z. Q., Zhang, Y. M., Pan, X. Z., Wang, B. and Chen, J. Q. (2013). Insight into the evolution of the histidine triad protein (HTP) family in Streptococcus. PLoS One 8(3): e60116.
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Zhang, L., Hou, D., Chen, X., Li, D., Zhu, L., Zhang, Y., Li, J., Bian, Z., Liang, X., Cai, X., Yin, Y., Wang, C., Zhang, T., Zhu, D., Zhang, D., Xu, J., Chen, Q., Ba, Y., Liu, J., Wang, Q., Chen, J., Wang, J., Wang, M., Zhang, Q., Zhang, J., Zen, K. and Zhang, C. Y. (2012). Exogenous plant MIR168a specifically targets mammalian LDLRAP1: evidence of cross-kingdom regulation by microRNA. Cell Res 22(1): 107-126.
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Yang, S., Yuan, Y., Wang, L., Li, J., Wang, W., Liu, H., Chen, J. Q., Hurst, L. D. and Tian, D. (2012). Great majority of recombination events in Arabidopsis are gene conversion events. Proc Natl Acad Sci U S A 109(51): 20992-20997.
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Xue, J. Y., Wang, Y., Wu, P., Wang, Q., Yang, L. T., Pan, X. H., Wang, B. and Chen, J. Q. (2012). A primary survey on bryophyte species reveals two novel classes of nucleotide-binding site (NBS) genes. PLoS One 7(5): e36700.
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Shao, Z. Q., Zhang, Y. M., Feng, X. Y., Wang, B. and Chen, J. Q. (2012). Synonymous codon ordering: a subtle but prevalent strategy of bacteria to improve translational efficiency. PLoS One 7(3): e33547.
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Yue, J. X., Meyers, B. C., Chen, J. Q., Tian, D. and Yang, S. (2012). Tracing the origin and evolutionary history of plant nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes. New Phytol 193(4): 1049-1063.
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Wu, Y., Yuan, H., Tan, S., Chen, J. Q., Tian, D. and Yang, H. (2011). Increased complexity of gene structure and base composition in vertebrates. J Genet Genomics 38(7): 297-305.
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Zhang, X., Feng, Y., Cheng, H., Tian, D., Yang, S. and Chen, J. Q. (2011). Relative evolutionary rates of NBS-encoding genes revealed by soybean segmental duplication. Mol Genet Genomics 285(1): 79-90.
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Wang, B., Shao, Z. Q., Xu, Y., Liu, J., Liu, Y., Hang, Y. Y. and Chen, J. Q. (2011). Optimal codon identities in bacteria: implications from the conflicting results of two different methods. PLoS One 6(7): e22714.
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Wang, B., Yuan, J., Liu, J., Jin, L. and Chen, J. Q. (2011). Codon usage bias and determining forces in green plant mitochondrial genomes. J Integr Plant Biol 53(4): 324-334.
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Yang, H., Zhong, Y., Peng, C., Chen, J. Q. and Tian, D. (2010). Important role of indels in somatic mutations of human cancer genes. BMC Med Genet 11: 128.
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Wang, B., Liu, J., Jin, L., Feng, X. Y. and Chen, J. Q. (2010). Complex mutation and weak selection together determined the codon usage bias in bryophyte mitochondrial genomes. J Integr Plant Biol 52(12): 1100-1108.
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Li, J., Ding, J., Zhang, W., Zhang, Y., Tang, P., Chen, J. Q., Tian, D. and Yang, S. (2010). Unique evolutionary pattern of numbers of gramineous NBS-LRR genes. Mol Genet Genomics 283(5): 427-438.
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Zhang, Y., Wang, J., Zhang, X., Chen, J. Q., Tian, D. and Yang, S. (2009). Genetic signature of rice domestication shown by a variety of genes. J Mol Evol 68(4): 393-402.
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Chen, J. Q., Wu, Y., Yang, H., Bergelson, J., Kreitman, M. and Tian, D. (2009). Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Mol Biol Evol 26(7): 1523-1531.
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Zhu, L., Zhang, Y., Zhang, W., Yang, S., Chen, J. Q. and Tian, D. (2009). Patterns of exon-intron architecture variation of genes in eukaryotic genomes. BMC Genomics 10: 47.
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Deng, H., Yu, F., Chen, J., Zhao, Y., Xiang, J. and Lin, A. (2008). Phosphorylation of Bad at Thr-201 by JNK1 promotes glycolysis through activation of phosphofructokinase-1. J Biol Chem 283(30): 20754-20760.
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Tian, D., Wang, Q., Zhang, P., Araki, H., Yang, S., Kreitman, M., Nagylaki, T., Hudson, R., Bergelson, J. and Chen, J. Q. (2008). Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. Nature 455(7209): 105-108.
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Sun, X., Zhang, Y., Yang, S., Chen, J. Q., Hohn, B. and Tian, D. (2008). Insertion DNA Promotes Ectopic Recombination during Meiosis in Arabidopsis. Mol Biol Evol 25(10): 2079-2083.
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Yang, S., Zhang, X., Yue, J. X., Tian, D. and Chen, J. Q. (2008). Recent duplications dominate NBS-encoding gene expansion in two woody species. Mol Genet Genomics 280(3): 187-198.
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Yang, S., Gu, T., Pan, C., Feng, Z., Ding, J., Hang, Y., Chen, J. Q. and Tian, D. (2008). Genetic variation of NBS-LRR class resistance genes in rice lines. Theor Appl Genet 116(2): 165-177.
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Conservation, P. E. S. (2008). Phylogeny of Dioscorea sect. Stenophora based on chloroplast matK, rbcL and trnL-F sequences. Journal of Systematics and Evolution 46(3): 315-321.
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Ding, J., Araki, H., Wang, Q., Zhang, P., Yang, S., Chen, J. Q. and Tian, D. (2007). Highly asymmetric rice genomes. BMC Genomics 8: 154.
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Ding, J., Zhang, W., Jing, Z., Chen, J. Q. and Tian, D. (2007). Unique pattern of R-gene variation within populations in Arabidopsis. Mol Genet Genomics 277(6): 619-629.
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Yang, S., Feng, Z., Zhang, X., Jiang, K., Jin, X., Hang, Y., Chen, J. Q. and Tian, D. (2006). Genome-wide investigation on the genetic variations of rice disease resistance genes. Plant Mol Biol 62(1-2): 181-193.
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Shen, J., Araki, H., Chen, L., Chen, J. Q. and Tian, D. (2006). Unique evolutionary mechanism in R-genes under the presence/absence polymorphism in Arabidopsis thaliana. Genetics 172(2): 1243-1250.
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Zhou, T., Wang, Y., Chen, J. Q., Araki, H., Jing, Z., Jiang, K., Shen, J. and Tian, D. (2004). Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271(4): 402-415.
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Zhang, Y., Zhang, D., Li, W., Chen, J., Peng, Y. and Cao, W. (2003). A novel real-time quantitative PCR method using attached universal template probe. Nucleic Acids Res 31(20): e123.
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Tian, D., Traw, M. B., Chen, J. Q., Kreitman, M. and Bergelson, J. (2003). Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 423(6935): 74-77.