(1) Mutational signature in colorectal cancer caused by genotoxic pks+ E. coli. Pleguezuelos-Manzano C*, Puschhof J*, Rosendahl Huber A*, van Hoeck A, Wood HM, Nomburg J, Gurjao C, Manders F, Dalmasso G, Stege PB, Paganelli FL, Geurts MH, Beumer J, Mizutani T, Miao Y, van der Linden R, van der Elst S; Genomics England Research Consortium, Garcia KC, Top J, Willems RJL, Giannakis M, Bonnet R, Quirke P, Meyerson M, Cuppen E, van Boxtel R#, Clevers H#. Nature. 2020 Apr;580(7802):269-273. doi: 10.1038/s41586-020-2080-8.
(2) Intestinal organoid co-cultures with microbes. Puschhof J*, Pleguezuelos-Manzano C*, Martinez-Silgado A, Akkerman N, Saftien A, Boot C, de Waal A, Beumer J, Dutta D, Heo I, Clevers H. Nature Protocols. 2021 Aug 11. doi: 10.1038/s41596-021-00589-z.
(3) High Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells. Beumer J*, Puschhof J*, Bauzá-Martinez J*, Martínez-Silgado A, Elmentaite R, James KR, Ross A, Hendriks D, Artegiani B, Busslinger G, Ponsioen B, Andersson-Rolf A, Saftien A, Boot C, Kretzschmar K, Geurts MH, Bar-Ephraim YE, Pleguezuelos-Manzano C, Post Y, Begthel H, van der Linden F, Lopez-Iglesias C, van de Wetering WJ, van der Linden R, Peters PJ, Heck AJR, Goedhart J, Snippert H, Zilbauer M, Teichmann SA, Wu W#, Clevers H#.
Cell. 2020 Jun 11;181:1-16 doi: 10.1016/j.cell.2020.04.036
(4) Snake Venom Gland Organoids. Post Y*, Puschhof J*, Beumer J*, Kerkkamp HM, de Bakker MAG, Slagboom J, de Barbanson B, Wevers NR, Spijkers XM, Olivier T, Kazandjian TD, Ainsworth S, Iglesias CL, van de Wetering WJ, Heinz MC, van Ineveld RL, van Kleef RGDM, Begthel H, Korving J, Bar-Ephraim YE, Getreuer W, Rios AC, Westerink RHS, Snippert HJG, van Oudenaarden A, Peters PJ, Vonk FJ, Kool J, Richardson MK, Casewell NR, Clevers H.
Cell. 2020 Jan 23;180(2):233-247.e21. doi: 10.1016/j.cell.2019.11.038.
(5) Snake venom gland organoids to understand venom production in vitro.
Puschhof J*, Post Y*, Beumer J*, Kerkkamp HM, Vonk FJ, Casewell NR, Richardson MK, Clevers H. Nature Protocols. 2021 Mar;16(3):1494-1510. doi: 10.1038/s41596-020-00463-4.
(6) SARS-CoV-2 productively infects human gut enterocytes. Lamers MM*, Beumer J*, van der Vaart J*, Knoops K, Puschhof J, Breugem TI, Ravelli RBG, Paul van Schayck J, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schippers D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans BL, Clevers H.
Science. 2020 May 1. pii: eabc1669. doi: 10.1126/science.abc1669.
(7) A bacterial mutational footprint in colorectal cancer genomes. Rosendahl Huber A #*, Pleguezuelos-Manzano C #*, Puschhof J#*. British Journal of Cancer. Br J Cancer. 2021 May;124(11):1751-1753. doi: 10.1038/s41416-021-01273-5.
(8) Organoids and organs-on-chip: insights into human gut-microbe interactions. Puschhof J*, Pleguezuelos-Manzano C*, Clevers H. Cell Host & Microbe. 2021 Jun 9;29(6):867-878. doi: 10.1016/j.chom.2021.04.002.