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Quality Control and Preprocessing of Sequencing Reads
测序读数的质量控制和预处理
Authors:  Zhiqiang HaoXiaojuan Liang, Guanglin Li and date: 07/05/2022, view: 3028, Q&A: 0
... Different tools have been developed for this, such as FastQC, iTools, fastp, cutadapt, and FASTX. ... A wrapper script called ‘fastqc’ is included in the top level directory of
A Bioinformatics Pipeline for Whole Exome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis
全外显子组测序的生物信息学分析流程:从原始数据处理到下游分析的步骤概述
Authors:  Narendra MeenaPraveen Mathur, Krishna Mohan Medicherla, Prashanth Suravajhala and date: 04/20/2018, view: 31917, Q&A: 0
... /fastqc ~/samples/sample1.fastq FastQC generates an HTML formatted report with box plots and graph plots downloaded/used from following locations:FastQC https://www.bioinformati
Identification of Accessible Chromatin Regions with MNase-seq
使用MNase-seq鉴定可及染色质区域
Authors:  Chuizheng KongHongcui Pei, Zefu Lu, Lifeng Gao, Guangyao Zhao, Xu Liu, Jizeng Jia and date: 03/20/2024, view: 595, Q&A: 0
... /raw_data/*.fq.gz do fastqc -o . /clean_data/*.fq.gz do fastqc -o . $name.log Quality control: Use FastQC again to evaluate the quality of the cleandata. v0.11.8 (Babrah