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Contigs Scaffolding with Hi-C for Plant Genomes
用Hi-C构建植物基因组Contigs Scaffolding
Authors:  Hong AnQing Xiao, Zhibo Jia, J. Chris Pires, Bin Yi and date: 08/05/2022, view: 1179, Q&A: 0
... Hi-C is a chromosome conformation capture method originally developed to detect genome-wide chromatin ... sequencing data in FASTQ formatProcedureInstall and configure JuicerJuic
Identification of Topologically Associating Domains (TADs) and Long-distance Enhancer–gene/gene–gene Interactions with Hi-C and HiChIP
使用 Hi-C 和 HiChIP 鉴定拓扑关联域 (TADs) 和长距离增强子-基因/基因-基因相互作用
Authors:  Xianhui HuangLongfu Zhu, Xianlong Zhang, Maojun Wang and date: 11/20/2023, view: 557, Q&A: 0
... Hi-C is one of the most widespread technologies to explore hierarchy 3D genome organizations, including ... The TAD and loops were identified by TADLib and Fit-Hi-C
蝴蝶Hi-C文库构建
Construction of Hi-C Library for Butterfly
Authors:  万雯婷常洲, 董志巍, 王文, 李学燕 and date: 09/16/2021, view: 2338, Q&A: 0
蝴蝶, Hi-C, 染色质,
Chromosome Scaffolding of Diploid Genomes Using ALLHiC
使用ALLHiC构建二倍体基因组的染色体支架
Authors:  Yi-Bin WangXing-Tan Zhang and date: 09/20/2022, view: 1088, Q&A: 0
... High-throughput chromosome conformation capture (Hi-C) technology has become an economical and robust ... Then, align the Hi-C data to corrected assembly, retai
Maize Genome Assembly with PacBio Reads
利用PacBio Reads组装玉米基因组
Authors:  Ying HuMarcio F. R. Resende Jr. and date: 07/05/2022, view: 1083, Q&A: 0
... For a detailed description of the method and parameters of BioNano optical mapping and Dovetail Hi-C, assembly study (Hu et al., 2021), other two data sources, including BioNano